Groups source: ARIS

Department of Synthetic Biology and Immunology

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Research activity

Code Science Field Subfield
4.06.00  Biotechnical sciences  Biotechnology   
1.05.00  Natural sciences and mathematics  Biochemistry and molecular biology   
3.01.00  Medical sciences  Microbiology and immunology   

Code Science Field
T490  Technological sciences  Biotechnology 
P004  Natural sciences and mathematics  Biochemistry, Metabolism 
P351  Natural sciences and mathematics  Structure chemistry 
B120  Biomedical sciences  Molecular biophysics 
B230  Biomedical sciences  Microbiology, bacteriology, virology, mycology 
B500  Biomedical sciences  Immunology, serology, transplantation 
B510  Biomedical sciences  Infections 
B740  Biomedical sciences  Pharmacological sciences, pharmacognosy, pharmacy, toxicology 
T360  Technological sciences  Biochemical technology 
B470  Biomedical sciences  Physiology 
B110  Biomedical sciences  Bioinformatics, medical informatics, biomathematics biometrics 
Keywords
Biotechnology, biochemistry, molecular biology, genetics, immunology, drug desugn, nuclear magnetic resonance, spectroscopy, molecular modeling, signal transduction, enzymes, micibal physiology, fungal taxonomy
Evaluation (metodology)
source: COBISS
Evaluation of bibliographic research performance indicators according to ARIS methodology
Points
6,659.58
A''
2,643.74
A'
4,948.56
A1/2
5,547.5
CI10
14,014
CImax
4,414
h10
50
A1
25.36
A3
12.21
Data for the last 5 years (citations for the last 10 years) on October 15, 2025; Data for score A3 calculation refer to period 2020-2024
Citations Citations for bibliographic records in COBIB.SI that are linked to records in citation databases
source: WoS source: Scopus source: COBISS
Database Linked records Citations Pure citations Average pure citations
WoS 371  15,284  13,798  37.19 
Scopus 368  18,765  17,247  46.87 
Researchers (46)
no. Code Name and surname Research area Status No. of publications
1.  58056  Borna Bacinger  Neurobiology  Researcher  3 
2.  56959  Jure Bohinc  Biochemistry and molecular biology  Researcher  6 
3.  55265  Elvira Boršić  Biochemistry and molecular biology  Researcher  16 
4.  18675  Robert Bremšak    Junior expert or technical associate  11 
5.  35277  PhD Tina Fink  Biochemistry and molecular biology  Researcher  32 
6.  34529  PhD Vida Forstnerič  Biochemistry and molecular biology  Researcher  48 
7.  59740  Ana Godeša  Biotechnology  Researcher  2 
8.  54624  Tea Govednik Hropot  Pharmacy  Researcher  10 
9.  17915  PhD Helena Gradišar  Biotechnology  Researcher  133 
10.  55029  PhD Arvind Kumar Gupta  Biochemistry and molecular biology  Researcher  8 
11.  23563  PhD Iva Hafner Bratkovič  Neurobiology  Researcher  234 
12.  59735  Anja Horvat  Biochemistry and molecular biology  Researcher  0 
13.  52001  PhD Vid Jazbec  Biochemistry and molecular biology  Researcher  18 
14.  06628  PhD Roman Jerala  Biochemistry and molecular biology  Researcher  1,267 
15.  58075  Mateja Jeršin  Biochemistry and molecular biology  Researcher  0 
16.  58063  Kaja Klemenčič  Biochemistry and molecular biology  Researcher  4 
17.  58511  Urška Knez Štibler  Biochemistry and molecular biology  Researcher  0 
18.  58577  Alina Konstantinova  Biochemistry and molecular biology  Researcher  3 
19.  58482  Archismita Kundu  Biochemistry and molecular biology  Researcher  5 
20.  34069  PhD Duško Lainšček  Biotechnology  Researcher  186 
21.  34252  PhD Tina Lebar  Biochemistry and molecular biology  Researcher  79 
22.  31709  PhD Ajasja Ljubetič  Biochemistry and molecular biology  Researcher  110 
23.  53665  Špela Malenšek  Biochemistry and molecular biology  Researcher  26 
24.  21426  PhD Mateja Manček Keber  Pharmacy  Researcher  164 
25.  53733  Matea Maruna  Biochemistry and molecular biology  Researcher  13 
26.  56930  Tjaša Mlakar  Biochemistry and molecular biology  Researcher  4 
27.  23939  PhD Martina Mohorčič  Biotechnology  Researcher  30 
28.  59741  Valeriya Musina  Pharmacy  Researcher  4 
29.  58600  PhD Federico Alberto Olivieri  Biochemistry and molecular biology  Researcher  6 
30.  53437  PhD Sara Orehek  Microbiology and immunology  Researcher  40 
31.  59399  Rodrigo Mateo Ortiz de la Morena    Junior expert or technical associate  5 
32.  55818  Jelica Pantović Žalig  Biochemistry and molecular biology  Researcher  9 
33.  53734  Peter Pečan  Biochemistry and molecular biology  Researcher  18 
34.  56958  Ema Pleško  Biochemistry and molecular biology  Researcher  0 
35.  56406  Klementina Podgoršek  Biotechnology  Researcher  0 
36.  55264  Eva Rajh  Biochemistry and molecular biology  Researcher  11 
37.  17281  Irena Škraba    Junior expert or technical associate  0 
38.  57983  Mojca Skrbinek  Biotechnology  Researcher  8 
39.  55061  Tina Strmljan    Junior expert or technical associate  0 
40.  37644  PhD Petra Sušjan Leite  Biotechnology  Researcher  56 
41.  59229  Maja Teodorović    Junior expert or technical associate  0 
42.  57067  Liza Ulčakar  Biochemistry and molecular biology  Researcher  8 
43.  58064  Nina Varda  Biotechnology  Researcher  13 
44.  55463  Hana Vokač  Biochemistry and molecular biology  Researcher  9 
45.  39124  PhD Taja Železnik Ramuta  Biochemistry and molecular biology  Researcher  119 
46.  52872  PhD Weijun Zhou  Biochemistry and molecular biology  Researcher  14 
Research projects (75) Legend
no. Code Title Period Head of the group No. of publications
1.  J1-1711  Designed protein origami based receptors: functionalized designed protein nanostructures for the recognition of the selected targets  7/1/2019 - 6/30/2022  PhD Helena Gradišar  1,418 
2.  J4-1779  Sonogenetics - ultrasound modulation of target gene expression  7/1/2019 - 6/30/2022  PhD Mojca Benčina  1,723 
3.  J3-1746  The functional role of cell death in different NLRP3 inflammasome activation pathways and its application for innovative cancer immunotherapy  7/1/2019 - 6/30/2022  PhD Iva Hafner Bratkovič  1,713 
4.  J4-9307  Genome editing of selected Brassica species with CRISPR/Cas9  7/1/2018 - 6/30/2022  PhD Jana Murovec  2,109 
5.  N4-0080  Optimizacija sinteznobioloških genskih vezij in reprogramiranja celic s pomočjo mikrofluidike (Slovene)  1/1/2018 - 12/31/2021  PhD Roman Jerala  1,577 
6.  J3-9268  Cancer immunotherapy modulation by ultrasound  7/1/2018 - 6/30/2021  PhD Mojca Benčina  1,821 
7.  J1-9173  Design of a fast signaling and logic processing pathway based on orthogonal proteases   7/1/2018 - 6/30/2021  PhD Roman Jerala  1,731 
8.  J3-9258  Molecular genetic biomarkers and mechanisms of unresponsiveness to biological therapy anti-TNF in patients with chronic immune diseases  7/1/2018 - 6/30/2021  PhD Uroš Potočnik  11,238 
9.  J3-9257  Molecular mechanism of endogenous TLR4 agonist formation and its role in chronic inflammatory diseases   7/1/2018 - 6/30/2021  PhD Mateja Manček Keber  1,691 
10.  Z3-9260  Designed safety switch for cell-based immunological therapy  7/1/2018 - 6/30/2020  PhD Vida Forstnerič  48 
11.  Z3-9276  Regulation of the therapeutic effect of CAR-T cells for increased safety and efficiency  7/1/2018 - 6/30/2020  PhD Duško Lainšček  186 
12.  J3-8196  Medcelični prenos signalnega kompleksa z izvenceličnimi vezikli, ki se sproščajo iz celic, ki nosijo z WM-povezano mutacijo v MyD88 (Slovene)  5/1/2017 - 4/30/2020  PhD Mateja Manček Keber  2,271 
13.  J3-8211  Razvoj protivnetnih regulatornih celic T (Treg) za terapijo avtoimunske sladkorne bolezni z uporabo načrtovanih transkripcijskih dejavnikov in sistema CRISPR/Cas9 (Slovene)  5/1/2017 - 4/30/2020  PhD Simon Horvat  4,415 
14.  J3-7034  Advanced nano-vaccines based on protein origami combining activators of innate and adaptive immune response  1/1/2016 - 12/31/2018  PhD Mojca Benčina  2,531 
15.  J7-7424  Evaluation of possible harmful effects of nanoparticles and underlying mechanisms - from physico-chemical and in vitro toxicity characterisation to innate immune system activation  1/1/2016 - 12/31/2018  PhD Vladimir Boštjan Bregar  4,009 
16.  N4-0037  In vivo folding of designed protein  9/1/2015 - 8/31/2018  PhD Roman Jerala  1,737 
17.  J3-6798  Biološki, genetski in epigenetski označevalci debelosti in metabolnega sindroma pri otrocih in mladostnikih (Slovene)  7/1/2014 - 6/30/2017  PhD Tadej Battelino  4,246 
18.  J3-6794  Celična energijska presnova kot tarča za zdravljenje raka ? genski in farmakološki pristop (Slovene)  7/1/2014 - 6/30/2017  PhD Mojca Pavlin  3,936 
19.  J3-6804  Identifikacija novih genov, mikro RNA ter biomarkerjev naravne imunosti za hiperholesterolemijo (Slovene)  7/1/2014 - 6/30/2017  PhD Simon Horvat  4,321 
20.  J3-6784  Molekularni mehanizem signalizacije enoverižne DNA preko znotrajceličnega Tollu-podobnega receptorja 9 (Slovene)  7/1/2014 - 6/30/2017  PhD Mojca Benčina  2,393 
21.  J1-6740  Načrtovana celična logična vezja (Slovene)  7/1/2014 - 6/30/2017  PhD Roman Jerala  2,328 
22.  L4-6812  Nove aplikacije načrtovanih polipeptidnih struktur (Slovene)  7/1/2014 - 6/30/2017  PhD Helena Gradišar  1,707 
23.  J2-6758  Razvoj in in vitro karakterizacija multimodalnih magnetnih nanodelcev za dostavo učinkovin in označevanje celic (Slovene)  7/1/2014 - 6/30/2017  PhD Vladimir Boštjan Bregar  2,767 
24.  J3-6791  Sintezno biološki pristop k celjenju ran in nevroregeneraciji (Slovene)  7/1/2014 - 6/30/2017  PhD Iva Hafner Bratkovič  2,326 
25.  Z3-6786  Aktivacija inflamasoma negativno povratno vpliva na signalne poti odvisne od MyD88 (Slovene)  5/1/2015 - 4/30/2017  PhD Monika Avbelj  55 
26.  J3-5503  DOLOČITEV MEHANIZMA VNETJA V CENTRALNEM ŽIVČNEM SISTEMU ZA INOVATIVNO TERAPIJO NEVRODEGENERATIVNIH BOLEZNI (Slovene)  8/1/2013 - 7/31/2016  PhD Iva Hafner Bratkovič  3,448 
27.  J4-5528  NAČRTOVANE POLIPEPTIDNE NANOSTRUKTURE ZA BIOTEHNOLOŠKE APLIKACIJE (Slovene)  8/1/2013 - 7/31/2016  PhD Roman Jerala  3,266 
28.  Z4-7445  Tools for genome engineering  1/1/2016 - 6/30/2016  PhD Rok Gaber  52 
29.  J1-4170  Celična signalizacija Tollu-podobnih receptorjev (Slovene)  7/1/2011 - 6/30/2014  PhD Roman Jerala  2,635 
30.  J1-4268  FUNKCIJSKA GENOMIKA INTERAKCIJE MED KROMPIRJEM IN PVY (Slovene)  7/1/2011 - 6/30/2014  PhD Jana Žel  4,480 
31.  J4-4324  Genska elektrotransfekcija mišice - od analize na posameznih celicah do numerične optimizacije parametrov v tkivu (Slovene)  7/1/2011 - 6/30/2014  PhD Mojca Pavlin  2,801 
32.  J3-4011  Mehanizem signalizacije flagelina preko Tollu-podobnega receptorja 5 (Slovene)  7/1/2011 - 6/30/2014  PhD Mojca Benčina  2,332 
33.  J4-4306  Preučevanje vloge biosinteze holesterola med embriogenezo ter spermatogenezo s transgenimi mišjimi modeli za gen Cyp51 (Slovene)  7/1/2011 - 6/30/2014  PhD Simon Horvat  3,152 
34.  N5-0003  SYNTOLL - Re-inženiring signalnega omrežja sesalske celice (Slovene)  7/1/2010 - 6/30/2013  PhD Roman Jerala  2,286 
35.  Z1-3673  Molecular mechanism of negative regulation of TLR4 signaling by RP105 and its coreceptor MD-1  5/1/2010 - 4/30/2013  PhD Jožica Vašl  38 
36.  L4-2404  Cepiva nove generacije proti Helicobacter pylori (Slovene)  5/1/2009 - 4/30/2012  PhD Roman Jerala  2,095 
37.  J7-2379  Mikrovezikli aktivirajo Tollu podobne receptorje in prispevajo k vnetnim procesom (Slovene)  5/1/2009 - 4/30/2012  PhD Mateja Manček Keber  337 
38.  J7-2011  Obramba človeških celic proti virusu HIV-1, ki je neodvisna od virusnih mutacij (Slovene)  5/1/2009 - 4/30/2012  PhD Andreja Majerle  1,610 
39.  J2-2131  Samo-sestavljivi nanomateriali na osnovi proteinskih ovitih vijačnic (Slovene)  5/1/2009 - 4/30/2012  PhD Jožefa Friedrich  1,473 
40.  J1-2271  Znotrajcelični Tollu podobni receptorji in vpliv inhibicije receptorjev TLR pri avtoimunih boleznih (Slovene)  5/1/2009 - 4/30/2012  PhD Mojca Benčina  1,726 
41.  Z7-2059  Aktivacija imunskega odziva z naravnimi in sintetičnimi nanodelci (Slovene)  5/1/2009 - 4/30/2011  PhD Iva Hafner Bratkovič  234 
42.  Z1-2314  Močno nabit MD-2 kot antagonist LPS (Slovene)  5/1/2009 - 4/30/2011  PhD Mateja Zorko Kern  40 
43.  J3-0589  Molecular mechanism of the recognition of double stranded viral RNA mediated by TLR3  2/1/2008 - 1/30/2011  PhD Roman Jerala  1,630 
44.  J2-9447  Bioactive materials with immobilized bifunctional peptides for biomedical applications  1/1/2007 - 12/31/2009  PhD Jožefa Friedrich  2,763 
45.  J3-9155  Interaction of LPS with HIV-1 protein gp120 as a basis for a new type of inhibition of virus binding to T cells  1/1/2007 - 12/31/2009  PhD Andreja Majerle  1,585 
46.  J4-9601  In vivo imaging temporal and spatial dynamics of calcium homeostat during systemic inflammatory response to endotoxins  1/1/2007 - 12/31/2009  PhD Mojca Benčina  1,651 
47.  J3-9548  Mechanism and diagnostics of prion replication  1/1/2007 - 12/31/2009  PhD Roman Jerala  1,876 
48.  J1-9793  Peptides preventing response to bacterial endotoxin  1/1/2007 - 12/31/2009  PhD Primož Pristovšek  1,463 
49.  J4-9606  Regulation of Primary Metabolism in Cancer Cells  1/1/2007 - 12/31/2009  PhD Matic Legiša  633 
50.  Z4-9595  New inhibitors of bacterial endotoxin receptor TLR4 based on binding to the hydrophobic pocket  1/1/2007 - 12/31/2008  PhD Helena Gradišar  133 
51.  L2-7080  Optimization of methacrylate monolithic supports for macromolecule separation  1/1/2006 - 12/31/2008  PhD Aleš Podgornik  5,171 
52.  J2-7018  Advanced bio-chemical tools in nano-processing of fibre forming polymers  9/1/2005 - 8/31/2008  PhD Vanja Kokol  2,312 
53.  J1-7206  MD-2 inhibition for treatment bacterial infection and chronic diseases  9/1/2005 - 8/31/2008  PhD Roman Jerala  2,218 
54.  Z4-7092  Mechanisms of TLR4 signalling of different pathogenic bacteria  9/1/2005 - 8/31/2007  PhD Roman Jerala  1,321 
55.  J4-6165  Development and application of biosenzors in biological systems  7/1/2004 - 6/30/2007  PhD Mojca Benčina  1,586 
56.  L3-6006  Prionske bolezni in njihova diagnostika (Slovene)  7/1/2004 - 6/30/2007  PhD Vladka Čurin Šerbec  5,317 
57.  J1-6357  Structural-based neutralization of endotoxin by peptides  7/1/2004 - 6/30/2007  PhD Primož Pristovšek  2,034 
58.  J4-6129  Development of gyrase inhibitors and peptides as antimicrobial agents  2/1/2004 - 1/30/2007  PhD Roman Jerala  1,688 
59.  L2-5297  Študij difuzijskih in kinetičnih parametrov monolitnih nosilcev z imobiliziranimi ligandi (Slovene)  1/1/2003 - 12/31/2005  PhD Mojca Benčina  1,828 
60.  L4-4323  Prenos določenih genov gliveAspergillus niger v druge komercialne mikroorganizme z namenom povečanja njihove produktivnosti (Slovene)  7/1/2002 - 6/30/2005  PhD Matic Legiša  707 
61.  L2-4373  Senzorji in merilni sistem za nadzor poteka fermentacije vina (Slovene)  7/1/2002 - 6/30/2005  PhD Štefan Čelan  3,208 
62.  Z4-3210  Calcium and cAMP “in vivo” and their influence on intracellular pH in Aspergillus niger  7/1/2001 - 6/30/2004  PhD Mojca Benčina  908 
63.  L4-3068  Uporaba ligninolitičnih encimov gliv bele trohnobe za razgradnjo sintetičnih barvil (Slovene)  7/1/2001 - 6/30/2004  PhD Helena Podgornik  3,726 
64.  J4-1497  Phospholipid mediated signal transduction in Aspergillus niger  1/1/1999 - 6/30/2001  PhD Katarina Jernejc  512 
65.  J4-0814  Biodiversity of microfungi in hypersaline waters of a saltern  7/1/1998 - 6/30/2001  PhD Nina Gunde-Cimerman  1,536 
66.  J4-0822  Pridobivanje keratinolitičnih encimov gliv (Slovene)  7/1/1998 - 6/30/2001  PhD Jožefa Friedrich  1,276 
67.  J1-0432  Uravnavanje biosinteze izoprenoidov pri ekstremofilnih glivah kvasovkah (Slovene)  7/1/1998 - 6/30/2001  PhD Ana Plemenitaš  1,697 
68.  L4-9092  Farmacevtske učinkovine in kultivacija biomase gobe Ganoderma (Slovene)  1/1/1997 - 6/30/2001  PhD Marin Berovič  2,054 
69.  J4-7451  Cyclic amp metabolism in fungus aspergillus niger  1/1/1996 - 6/30/2001  PhD Matic Legiša  338 
70.  J4-1512  Pharmaceutically interesting natural inhibitors of mutagenesis and carcinogenesis  1/1/1999 - 6/30/2000  PhD Metka Filipič  2,634 
71.  J1-8751  Charaterisation of the enzymes involved in cyclic AMP metabolism in fungus Aspergillus niger  1/1/1997 - 12/31/1999  PhD Matic Legiša  363 
72.  J4-8846  Fungal metabolites  1/1/1997 - 12/31/1999  PhD Aleksa Cimerman  1,239 
73.  J4-7453  Primerjalne raziskave askomicetnih in bazidiomicetnih gliv (Slovene)  1/1/1996 - 12/31/1998  PhD Katarina Jernejc  1,946 
74.  J4-7241  Biosinteza keratinolitičnih encimov gliv (Slovene)  1/1/1995 - 6/30/1998  PhD Jožefa Friedrich  184 
75.  J4-7246  Mikroglive ekstremnih habitatov (Slovene)  1/1/1995 - 6/30/1998  PhD Nina Gunde-Cimerman  1,470 
ARIS research and infrastructure programmes (4) Legend
no. Code Title Period Head of the group No. of publications
1.  P4-0176  Molecular Biotechnology: from Dynamics of Biological Systems to Applications  1/1/2009 - 12/31/2014  PhD Roman Jerala  3,482 
2.  P4-0176  Molecular Biotechnology: from Dynamics of Biological Systems to Applications  1/1/2004 - 12/31/2008  PhD Roman Jerala  3,573 
3.  P0-0520-0104  Bioreaktorsko inženirstvo in biotehnologija gliv (Slovene)  1/1/1999 - 12/31/2003  PhD Marin Berovič  2,472 
4.  P0-0519-0104  Physiology, biochemistry and molecular biology of micro-organisms  1/1/1999 - 12/31/2003  PhD Matic Legiša  713 
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